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While code behind the discretization of the web remains the main engine driving the mathematics of this model, the GUI has probably been where most of the work has gone, making the creation of webs accessible to anyone, although it's still possible to create a web simply by loading a data file.

Solving for the solution with fem

Along with calculating eigenvalues, we can solve a system of differential equations in order to solve our second order PDE once given our M , K , and G matrices. Since the wave equation with damping can be written as an ODE system

t c d = 0 I M - 1 K M - 1 G c d

Since M is positive definite, we can compute the matrix-vector product M - 1 K c and M - 1 G d using the Cholesky factorization M = C T C , where C is an upper triangular matrix. We can then compute

d ' = C - 1 C - T K c - G d

and use a numerical solver. We feed into Matlab's ode45 to compute our solution over time given any initial condition.

To simulate a smooth initial ripple, I coded in a 3-point Gaussian as the initial displacement to a single node when the user chooses to pluck the web at that specific node. Plucking multiple nodes sums the displacement up over each node, so that any overlap of the Gaussian initial condition between two nodes is accounted for.

Solving the eigenvalue problem with fem

Once we're given the mass and stiffness matrices, it's easy to numerically solve for the eigenvalues. Writing our second order system with damping ( M c ' ' = K c - G c ' ) as a linear system, we can solve for our eigenvalues by solving the system

0 I - K - G u v = λ I 0 0 M u v

This is typically done using eig(A,B) in Matlab to solve this generalized eigenvalue problem, where A , B are, respectively, the left and right hand matrices in the above equation. However, a comparison of the FEM eigenvalues of a simple string in to the closed form solutions yields a large discrepancy for larger magnitude eigenvalues.

Comparison of FEM eigenvalue approximations to closed form solutions.

This behavior is typical of finite element discretizations; given the non-smooth nature of our basis functions, it is difficult to accurately approximate high-frequency eigenfunctions, and typically, only about 10 - 15 % of the smallest approximated eigenvalues from FEM tend to be accurate. In order to compensate for this inaccuracy as much as possible, we try to find the few smallest eigenvalues of our system by finding the largest eigenvalues of the inverse of the system (which is arrived at from algebraic manipulation and similarity transforms) and then inverting those values. The eigs package in Matlab is suited perfectly for that; eigscan quickly compute the few smallest or largest eigenvalues of a large matrix where traditional eigensolvers typically fail due to high algorithmic complexity costs.

Other approaches

Since the finite element method does a poor job of representing higher frequency modes, work has been done by Dr. Embree and Jeremy Morell in implementing a similar generalized spectral discretization using Chebyshev polynomials, which proved much more accurate in describing eigenmodes corresponding to larger magnitude eigenvalues.

Questions & Answers

what is microbiology
Agebe Reply
What is a cell
Odelana Reply
what is cell
Mohammed
how does Neisseria cause meningitis
Nyibol Reply
what is microbiologist
Muhammad Reply
what is errata
Muhammad
is the branch of biology that deals with the study of microorganisms.
Ntefuni Reply
What is microbiology
Mercy Reply
studies of microbes
Louisiaste
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Bacteria doesn't produce energy they are dependent upon their substrate in case of lack of nutrients they are able to make spores which helps them to sustain in harsh environments
_Adnan
But not all bacteria make spores, l mean Eukaryotic cells have Mitochondria which acts as powerhouse for them, since bacteria don't have it, what is the substitution for it?
Muhamad
they make spores
Louisiaste
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the significance of food webs for disease transmission
Abreham
food webs brings about an infection as an individual depends on number of diseased foods or carriers dully.
Mark
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Esinniobiwa Reply
Assimilatory nitrate reduction is a process that occurs in some microorganisms, such as bacteria and archaea, in which nitrate (NO3-) is reduced to nitrite (NO2-), and then further reduced to ammonia (NH3).
Elkana
This process is called assimilatory nitrate reduction because the nitrogen that is produced is incorporated in the cells of microorganisms where it can be used in the synthesis of amino acids and other nitrogen products
Elkana
Examples of thermophilic organisms
Shu Reply
Give Examples of thermophilic organisms
Shu
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Micheal Reply
Prevent foreign microbes to the host
Abubakar
they provide healthier benefits to their hosts
ayesha
They are friends to host only when Host immune system is strong and become enemies when the host immune system is weakened . very bad relationship!
Mark
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faisal Reply
cell is the smallest unit of life
Fauziya
cell is the smallest unit of life
Akanni
ok
Innocent
cell is the structural and functional unit of life
Hasan
is the fundamental units of Life
Musa
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Micheal Reply
There are nothing like emergency disease but there are some common medical emergency which can occur simultaneously like Bleeding,heart attack,Breathing difficulties,severe pain heart stock.Hope you will get my point .Have a nice day ❣️
_Adnan
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Innocent
I think infection prevention and control is the avoidance of all things we do that gives out break of infections and promotion of health practices that promote life
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en français
Adama
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ESTHER Reply
Many sites of the body have it Skin Nasal cavity Oral cavity Gastro intestinal tract
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skin
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Sadik
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all
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by fussion
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what are the ways of control and prevention of nosocomial infection in the hospital
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Source:  OpenStax, The art of the pfug. OpenStax CNX. Jun 05, 2013 Download for free at http://cnx.org/content/col10523/1.34
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