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The cell can be modeled as a leaky capacitor that separates charge by controlling the flow of ions across the cell membrane, making a difference between potentials φ i n and φ o u t across the membrane ( v = φ i n - φ o u t ). This model approximates the subthreshold voltage ( v before it reaches the threshold voltage v t h ) and the time that v does reach threshold v t h . When v reaches the threshold voltage, v experiences a sharp increase then decrease and the cell is said to have “spiked" or “fired".

Let C m denote the membrane capacitance, g C l and g s y n denote the conductances of the chloride channels and the synapse, respectively, and v C l denote the reversal potential (the voltage at which no net flow of chloride ions occurs). v s y n is determined by the equilibrium concentrations of the ion of the associated channel, [link] . Input from other cells adds excitatory synaptic current. This input allows for the cell to depolarize and eventually reach v t h and fire, which sends an electric signal to neighboring cells. The electric signal from a neighboring cell allows for voltage-gated channels to open, which affects the synaptic conductance g s y n . We set the reversal potential above a threshold voltage so that as g s y n increases and the channels open, the cell's voltage v approaches the threshold v t h . When v v t h , the cell fires [link] . See [link] for a model of a cell as a circuit [link] . The synaptic conductance is governed by the ODE

τ g s y n ' = - g s y n + i w i i n p n δ ( t - T n ) ,

where τ is the decay constant, w i i n p is the weight of synaptic input from the i th synapse, T n is the set of input spike times for the presynaptic cell i , and δ is the Dirac delta function. From Dr. Cox's book [link] , we see that applying Kirchoff's current law results in

C m d v d t + g C l ( v - v C l ) + g s y n ( v - v s y n ) = 0 .
Simple 2-cell network. Cell 1 receives input from an external source, and Cell 2 receives input from Cell 1. The conductances and voltages of the two cells are calculated by equations [link] and [link] , respectively [link] .

Model of dre: 120-cell ring

120-cell ring. We put 120 cells, represented by circles, in a ring architecture with bidirectional interactions between cells, as well as synapses to sources of external input.ÊLike the DRE, each place cell has a corresponding place field on a circular path that a simulated rat traverses clockwise. The bidirectional interaction between two neighboring cells is modeled through two synapses with one synapse for each direction [link] . The weights of the synapses changes over time according to the STDP model described in "STDP" [link] .

We use the IAF model for single cells, and we connect these cells into a ring of 120 place cells to simulate the DRE [link] . The 120-cell ring is depicted in [link] . Each cell receives external spatial input as well as input from neighboring cells. The conductances and voltages of Cells 1 and 2 are depicted in [link] as calculated by equations [link] and [link] . We monitor the weights of the connections between neighboring cells over time, where there is an arbitrary maximum weight bound so that the weights do not approach infinity and a minimum weight bound of 0 so the weights do not become negative. We also monitor how the changes of the weights affect the position of the place fields. See [link] for a depiction of the IAF model.

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Source:  OpenStax, The art of the pfug. OpenStax CNX. Jun 05, 2013 Download for free at http://cnx.org/content/col10523/1.34
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